Phenomics

 
 Stand-alone phenome system
 Background
Plant life is determined by a series of developmental progressions which are tightly regulated by genetic programs. In a certain developmental stage, plants display organismal phenotypes by integrating genetic and environmental inputs on top of their physiological status. These organismal phenotypes include not only morphological and physiological status, but also molecular status involving proteome, transcriptiomes, and metabolomes. We aim to understand how plants determine their life history and senescence. To achieve this, we are developing a standalone plant systems analyzer which allows us to analyze plant physiological and molecular responses in tightly controlled environments during whole life spans
 Compositions
 Automated plant growth control system
  – RGB Imaging Station : Morphology and growth-rate analysis
– 3D scanner : 3 Dimensional morphological analysis
– Hyperspectral Imaging : Estimation of metabolite profiling with reflection light
– Fluorescence Imaging : Photochemical efficiency & metabolite measurement
– Thermal Imaging : Measurement of guard cell activity based on water evaporation.
 Automated morphological/physiology phenome analysis system
  – RGB Imaging Station : Morphological and growth kinetics analysis
– 3D scanner : 3 Dimensional morphological analysis
– Hyperspectral Imaging : Estimation of metabolite profiling with reflection light
– Fluorescence Imaging : photochemical efficiency & metabolite measurement
– Thermal Imaging : Measurement of guard cell activity based on water evaporation.
RGB imaging station (Morphological analysis)
RGB imaging station (Growth-rate analysis)
3D scanner (3D structure)
Hyperspectral Imaging
Fluorescence Imaging
Thermal Imaging
 Automated molecular phenome analysis system
  – Automated multi-omics system to analyze transcriptome, proteome, and metabolome
-Next Generation Sequencing System (Illumina Hiseq2500)
-mRNA-seq, smRNA-seq, Bisulfite-seq, ChIP-seq, etc.
-High Resolution Microarray Scanner (Agilent SureScan Microarray Scanner)
-CGH, CNV, Methylation, Chip on Chip, miRNA Expression, Gene Expression
-Quadrupole FT/Orbitrap Mass Spectrometer (Thermo Scientific Q Exactive)
-Proteomics profiling, metabolomics profiling, protein-protein interaction profiling, post translational modification
Automated multi-omics system
'+
1
'+
2 - 3
4 - 5
6 - 7
8 - 9
10 - 11
12 - 13
13 - 14
[x]